Amazon EC2 Spot Workshops > Nextflow with AWS Batch > What you learned
First, you did great! Let us go over what we learned today…
Summary
With this workshop, we learned how to install and configure Nextflow for genomics pipelines and how to use AWS Batch and Amazon EC2 Spot capacity to improve cost efficiency of these pipelines.
Let’s see how cost efficient is to use Spot for Nextflow Genomic pipelines
Cost Optimisation
Head to the EC2 Dashboard and find the Spot Request section.
Here you can check how much you saved throughout the workshop by running the job-queue on EC2 Spot instances.
Follow Up
Now that you know how to use Nextflow and AWS Spot and AWS Batch, you can build your own custom pipelines.
- Get inspired by Nextflow lists of community shared pipelines https://github.com/nextflow-io/awesome-nextflow
- Visit community website such as NF Core, for curated genomic pipelines with nextflow https://nf-co.re/
- Seqera Labs, creator of Nextflow, has also a github https://github.com/seqeralabs/
- Visit the Amazon EC2 Spot page https://aws.amazon.com/ec2/spot/ to learn more on AWS EC2 Spot.
- Visit the Genomic on AWS page https://aws.amazon.com/health/genomics/
- part of the Healthcare and Life Sciences industry landing page https://aws.amazon.com/health/
- Quickstart for Nextflow reference architecture is available here https://aws.amazon.com/quickstart/biotech-blueprint/nextflow/